{ "_id": "6a57d771ff0138dec5d71fd4", "Package": "mSigPlot", "Title": "Plotting Mutational Signatures and Mutational Spectra", "Version": "2.0.41", "Authors@R": "person(\"Steven\", \"Rozen\", , \"steverozen@pm.me\", role = c(\"aut\", \"cre\"))", "Description": "Plotting functions for mutational signatures and\nmutational spectra, including single base substitutions (SBS),\ndoublet base substitutions (DBS), and small insertions and\ndeletions (indels). Generates plots similar to those used\npreviously in Alexandrov et al.\n(2020) and Rozen et al.\n(2026).", "License": "GPL (>= 3)", "URL": "https://steverozen.github.io/mSigPlot/,\nhttps://github.com/steverozen/mSigPlot", "BugReports": "https://github.com/steverozen/mSigPlot/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libcairo2-dev", "Repository": "https://steverozen.r-universe.dev", "Date/Publication": "2026-07-15 17:12:45 UTC", "RemoteUrl": "https://github.com/steverozen/msigplot", "RemoteRef": "HEAD", "RemoteSha": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-15 18:50:04 UTC", "User": "root" }, "Author": "Steven Rozen [aut, cre]", "Maintainer": "Steven Rozen ", "_user": "steverozen", "_type": "src", "_file": "mSigPlot_2.0.41.tar.gz", "_fileid": "https://r2.ropensci.org/d46c5b7249d46a5a068030eab4a10e3b9c8d65930ad0a2e5bbd07b4bfb706f5d", "_filesize": 2340499, "_sha256": "d46c5b7249d46a5a068030eab4a10e3b9c8d65930ad0a2e5bbd07b4bfb706f5d", "_expires": "2026-10-23T18:54:39.000Z", "_created": "2026-07-15T18:50:04.000Z", "_published": "2026-07-15T18:54:41.321Z", "_jobs": [ { "job": 87443600833, "time": 197, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8353965188" }, { "job": 87443600847, "time": 240, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8353984080" }, { "job": 87443600872, "time": 127, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8353952351" }, { "job": 87443600811, "time": 150, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8353959177" }, { "job": 87442871585, "time": 196, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8353875005" }, { "job": 87443600800, "time": 141, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8353940002" }, { "job": 87443600871, "time": 133, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8353937190" }, { "job": 87443600914, "time": 141, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8353939645" }, { "job": 87443600818, "time": 140, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8353939759" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059", "_status": "success", "_upstream": "https://github.com/steverozen/msigplot", "_commit": { "id": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "author": "Steven G. Rozen ", "committer": "Steven G. Rozen ", "message": "CI: drop _R_CHECK_CRAN_INCOMING_USE_ASPELL_ (runners lack aspell)\n\nThe r-lib/actions GitHub runners do not install system aspell/hunspell,\nso enabling this flag produced a benign 'No suitable spell-checker\nprogram found' NOTE on every job. Local spell checking via\ndevtools::spell_check() during the /cran-submit workflow already\ncovers this before submission.\n\nCo-Authored-By: Claude Opus 4.7 (1M context) \n", "time": 1784135565 }, "_maintainer": { "name": "Steven Rozen", "email": "steverozen@pm.me", "login": "steverozen", "description": "", "uuid": 30855154 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "Cairo", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggrepel", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "pkgdown", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" } ], "_owner": "steverozen", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-52", "n": 8 }, { "week": "2026-01", "n": 18 }, { "week": "2026-02", "n": 3 }, { "week": "2026-03", "n": 8 }, { "week": "2026-06", "n": 2 }, { "week": "2026-07", "n": 14 }, { "week": "2026-08", "n": 2 }, { "week": "2026-09", "n": 24 }, { "week": "2026-10", "n": 1 }, { "week": "2026-14", "n": 18 }, { "week": "2026-15", "n": 11 }, { "week": "2026-16", "n": 2 }, { "week": "2026-17", "n": 31 }, { "week": "2026-18", "n": 4 }, { "week": "2026-19", "n": 7 }, { "week": "2026-20", "n": 2 }, { "week": "2026-29", "n": 4 } ], "_tags": [ { "name": "v2.0.38", "date": "2026-05-05" }, { "name": "v2.0.41", "date": "2026-07-15" } ], "_stars": 0, "_contributors": [ { "user": "steverozen", "count": 160, "uuid": 30855154 } ], "_userbio": { "uuid": 30855154, "type": "user", "name": "Steven G. Rozen", "followers": 30 }, "_downloads": { "count": 205, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mSigPlot" }, "_devurl": "https://github.com/steverozen/msigplot", "_pkgdown": "https://steverozen.github.io/mSigPlot/", "_searchresults": 40, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mSigPlot.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/steverozen/msigplot", "_realowner": "steverozen", "_cranurl": true, "_releases": [ { "version": "2.0.38", "date": "2026-05-05" }, { "version": "2.0.41", "date": "2026-07-15" } ], "_exports": [ "catalog_row_order", "id89_figlabels", "plot_DBS136", "plot_DBS136_pdf", "plot_DBS144", "plot_DBS144_pdf", "plot_DBS78", "plot_DBS78_pdf", "plot_guess", "plot_guess_pdf", "plot_ID166", "plot_ID166_pdf", "plot_ID476", "plot_ID476_pdf", "plot_ID476_right", "plot_ID476_right_pdf", "plot_ID83", "plot_ID83_pdf", "plot_ID89", "plot_ID89_pdf", "plot_SBS12", "plot_SBS12_pdf", "plot_SBS1536", "plot_SBS1536_pdf", "plot_SBS192", "plot_SBS192_pdf", "plot_SBS288", "plot_SBS288_pdf", "plot_SBS96", "plot_SBS96_pdf" ], "_help": [ { "page": "bar_plots", "title": "plot_DBS144, plot_DBS144_pdf, plot_DBS78, plot_DBS78_pdf, plot_ID166, plot_ID166_pdf, plot_ID476, plot_ID476_pdf, plot_ID476_right, plot_ID476_right_pdf, plot_ID83, plot_ID83_pdf, plot_ID89, plot_ID89_pdf, plot_SBS12, plot_SBS12_pdf, plot_SBS192, plot_SBS192_pdf, plot_SBS288, plot_SBS96, plot_SBS96_pdf", "topics": [ "bar_plots", "plot_DBS144", "plot_DBS144_pdf", "plot_DBS78", "plot_DBS78_pdf", "plot_ID166", "plot_ID166_pdf", "plot_ID476", "plot_ID476_pdf", "plot_ID476_right", "plot_ID476_right_pdf", "plot_ID83", "plot_ID83_pdf", "plot_ID89", "plot_ID89_pdf", "plot_SBS12", "plot_SBS12_pdf", "plot_SBS192", "plot_SBS192_pdf", "plot_SBS288", "plot_SBS288_pdf", "plot_SBS96", "plot_SBS96_pdf" ] }, { "page": "catalog_row_order", "title": "Return catalog row orders for all supported catalog types", "topics": [ "catalog_row_order" ] }, { "page": "heatmap_plots", "title": "plot_DBS136, plot_DBS136_pdf, plot_SBS1536, plot_SBS1536_pdf", "topics": [ "heatmap_plots", "plot_DBS136", "plot_DBS136_pdf", "plot_SBS1536", "plot_SBS1536_pdf" ] }, { "page": "id89_figlabels", "title": "Derive ID89 figure-axis labels from canonical IndelType strings", "topics": [ "id89_figlabels" ] }, { "page": "plot_guess", "title": "plot_guess, plot_guess_pdf", "topics": [ "plot_guess", "plot_guess_pdf" ] } ], "_readme": "https://github.com/steverozen/msigplot/raw/HEAD/README.md", "_rundeps": [ "Cairo", "cli", "cpp11", "dplyr", "farver", "generics", "ggplot2", "ggrepel", "glue", "gridExtra", "gtable", "isoband", "labeling", "lifecycle", "magrittr", "patchwork", "pillar", "pkgconfig", "R6", "RColorBrewer", "Rcpp", "rlang", "S7", "scales", "tibble", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "mSigPlot.Rmd", "filename": "mSigPlot.html", "title": "Plotting mutational signatures with mSigPlot", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "SBS96 -- single base substitutions in trinucleotide context", "Optional styling: horizontal gridlines and an external title", "ID83 -- COSMIC indel classification", "ID89 -- 89-channel indel classification", "ID476 -- 476-channel indel classification", "ID476 right panel", "DBS78 -- doublet base substitutions", "SBS192 -- SBS with transcription strand", "DBS144 -- DBS with transcription strand", "DBS136 -- DBS heatmap", "SBS1536 -- SBS pentanucleotide context", "SBS288 -- SBS with three-strand context", "ID166 -- indel genic/intergenic", "SBS12 -- strand bias summary", "Auto-dispatch with plot_guess()", "Multi-sample PDF export" ], "created": "2026-02-25 01:45:57", "modified": "2026-07-15 01:21:01", "commits": 6 } ], "_score": 5.531478917042255, "_indexed": true, "_nocasepkg": "msigplot", "_universes": [ "steverozen" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.41", "date": "2026-07-15T18:52:29.000Z", "distro": "resolute", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/44a91a55867cc6e3c71550e4f4fc7d1c2f9a340af37c93e2078018010da7af15", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" }, { "r": "4.6.1", "os": "linux", "version": "2.0.41", "date": "2026-07-15T18:53:06.000Z", "distro": "resolute", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/1ab8e506826e9d56d80f8b68bd9b942dafc5b14af55f7d403e17ed5e3ea49d26", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" }, { "r": "4.5.3", "os": "mac", "version": "2.0.41", "date": "2026-07-15T18:52:23.000Z", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/6067c4e298a42fe68b2c9b150c0827c0fb8eb65d8256c2959077318ad51eb849", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" }, { "r": "4.6.1", "os": "mac", "version": "2.0.41", "date": "2026-07-15T18:52:23.000Z", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/93289b79caa84dd1e4f149e87578563d7fff6344b1f16c43802fdd9a2d0b51dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.41", "date": "2026-07-15T18:52:43.000Z", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/a64ed3f36f5786bd3366329e49f3c871ea1619de7ccbc342562c280a6cd2e389", "status": "success", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" }, { "r": "4.7.0", "os": "win", "version": "2.0.41", "date": "2026-07-15T18:51:31.000Z", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/6e96095bda33be7c9f1c4a37588f1c5cd6426488089073d690970de76085482a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" }, { "r": "4.5.3", "os": "win", "version": "2.0.41", "date": "2026-07-15T18:51:22.000Z", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/b01706fc16b0e9fcce7c007ed9500f06e094be053816326e13e9d3e0c4b4fcfd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" }, { "r": "4.6.1", "os": "win", "version": "2.0.41", "date": "2026-07-15T18:51:22.000Z", "commit": "ed62ebdc5002d7c0c104972f1163b4c91b8598ec", "fileid": "https://r2.ropensci.org/bf953df2432a624c5fdaa5e2aa4a1bad51c67466e83a3b4ee362c98730f58e48", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/steverozen/actions/runs/29441939059" } ] }