{
  "_id": "6a1f29b4b401979e73424178",
  "Package": "mSigPlot",
  "Title": "Plotting Mutational Signatures and Mutational Spectra",
  "Version": "2.0.41",
  "Authors@R": "person(\"Steven\", \"Rozen\", , \"steverozen@pm.me\", role = c(\"aut\", \"cre\"))",
  "Description": "Plotting functions for mutational signatures and\nmutational spectra, including single base substitutions (SBS),\ndoublet base substitutions (DBS), and small insertions and\ndeletions (indels). Generates plots similar to those used\npreviously in Alexandrov et al.\n(2020)<doi:10.1038/s41586-020-1943-3> and Rozen et al.\n(2026)<doi:10.5281/zenodo.18451842>.",
  "License": "GPL (>= 3)",
  "URL": "https://steverozen.github.io/mSigPlot/,\nhttps://github.com/steverozen/mSigPlot",
  "BugReports": "https://github.com/steverozen/mSigPlot/issues",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libcairo2-dev",
  "Repository": "https://steverozen.r-universe.dev",
  "Date/Publication": "2026-05-15 21:41:06 UTC",
  "RemoteUrl": "https://github.com/steverozen/msigplot",
  "RemoteRef": "HEAD",
  "RemoteSha": "f630c27b343b720642b0c9410e0457cb851669b1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 21:58:17 UTC",
    "User": "root"
  },
  "Author": "Steven Rozen [aut, cre]",
  "Maintainer": "Steven Rozen <steverozen@pm.me>",
  "MD5sum": "255a324104570d5cad15e58c4745014c",
  "_user": "steverozen",
  "_type": "src",
  "_file": "mSigPlot_2.0.41.tar.gz",
  "_fileid": "284280866e288ea2e317ac0286dea396bc32b2313846746d5373a567dc0174e0",
  "_filesize": 2338548,
  "_sha256": "284280866e288ea2e317ac0286dea396bc32b2313846746d5373a567dc0174e0",
  "_created": "2026-05-15T21:58:17.000Z",
  "_published": "2026-06-02T19:06:28.511Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79150496757,
      "time": 230,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7027329459"
    },
    {
      "job": 79150497241,
      "time": 203,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7027323400"
    },
    {
      "job": 79150497433,
      "time": 105,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7027302164"
    },
    {
      "job": 79150496789,
      "time": 144,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7027310531"
    },
    {
      "job": 79150496391,
      "time": 213,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7027279297"
    },
    {
      "job": 79150496335,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367283871"
    },
    {
      "job": 79150496763,
      "time": 158,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7027313787"
    },
    {
      "job": 79150497355,
      "time": 131,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7027308082"
    },
    {
      "job": 79150496916,
      "time": 144,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7027311699"
    }
  ],
  "_buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/steverozen/msigplot",
  "_commit": {
    "id": "f630c27b343b720642b0c9410e0457cb851669b1",
    "author": "Steven G. Rozen <steverozen@pm.me>",
    "committer": "Steven G. Rozen <steverozen@pm.me>",
    "message": "corrected typo\n",
    "time": 1778881266
  },
  "_maintainer": {
    "name": "Steven Rozen",
    "email": "steverozen@pm.me",
    "login": "steverozen",
    "uuid": 30855154
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "Cairo",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "patchwork",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pkgdown",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    }
  ],
  "_owner": "steverozen",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-52",
      "n": 8
    },
    {
      "week": "2026-01",
      "n": 18
    },
    {
      "week": "2026-02",
      "n": 3
    },
    {
      "week": "2026-03",
      "n": 8
    },
    {
      "week": "2026-06",
      "n": 2
    },
    {
      "week": "2026-07",
      "n": 14
    },
    {
      "week": "2026-08",
      "n": 2
    },
    {
      "week": "2026-09",
      "n": 24
    },
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-14",
      "n": 18
    },
    {
      "week": "2026-15",
      "n": 11
    },
    {
      "week": "2026-16",
      "n": 2
    },
    {
      "week": "2026-17",
      "n": 31
    },
    {
      "week": "2026-18",
      "n": 4
    },
    {
      "week": "2026-19",
      "n": 7
    },
    {
      "week": "2026-20",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "v2.0.38",
      "date": "2026-05-05"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "steverozen",
      "count": 155,
      "uuid": 30855154
    }
  ],
  "_userbio": {
    "uuid": 30855154,
    "type": "user",
    "name": "Steven G. Rozen"
  },
  "_downloads": {
    "count": 135,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mSigPlot"
  },
  "_devurl": "https://github.com/steverozen/msigplot",
  "_pkgdown": "https://steverozen.github.io/mSigPlot/",
  "_searchresults": 36,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mSigPlot.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/steverozen/msigplot",
  "_realowner": "steverozen",
  "_cranurl": true,
  "_releases": [
    {
      "version": "2.0.38",
      "date": "2026-05-05"
    }
  ],
  "_exports": [
    "catalog_row_order",
    "id89_figlabels",
    "plot_DBS136",
    "plot_DBS136_pdf",
    "plot_DBS144",
    "plot_DBS144_pdf",
    "plot_DBS78",
    "plot_DBS78_pdf",
    "plot_guess",
    "plot_guess_pdf",
    "plot_ID166",
    "plot_ID166_pdf",
    "plot_ID476",
    "plot_ID476_pdf",
    "plot_ID476_right",
    "plot_ID476_right_pdf",
    "plot_ID83",
    "plot_ID83_pdf",
    "plot_ID89",
    "plot_ID89_pdf",
    "plot_SBS12",
    "plot_SBS12_pdf",
    "plot_SBS1536",
    "plot_SBS1536_pdf",
    "plot_SBS192",
    "plot_SBS192_pdf",
    "plot_SBS288",
    "plot_SBS288_pdf",
    "plot_SBS96",
    "plot_SBS96_pdf"
  ],
  "_help": [
    {
      "page": "bar_plots",
      "title": "plot_DBS144, plot_DBS144_pdf, plot_DBS78, plot_DBS78_pdf, plot_ID166, plot_ID166_pdf, plot_ID476, plot_ID476_pdf, plot_ID476_right, plot_ID476_right_pdf, plot_ID83, plot_ID83_pdf, plot_ID89, plot_ID89_pdf, plot_SBS12, plot_SBS12_pdf, plot_SBS192, plot_SBS192_pdf, plot_SBS288, plot_SBS96, plot_SBS96_pdf",
      "topics": [
        "bar_plots",
        "plot_DBS144",
        "plot_DBS144_pdf",
        "plot_DBS78",
        "plot_DBS78_pdf",
        "plot_ID166",
        "plot_ID166_pdf",
        "plot_ID476",
        "plot_ID476_pdf",
        "plot_ID476_right",
        "plot_ID476_right_pdf",
        "plot_ID83",
        "plot_ID83_pdf",
        "plot_ID89",
        "plot_ID89_pdf",
        "plot_SBS12",
        "plot_SBS12_pdf",
        "plot_SBS192",
        "plot_SBS192_pdf",
        "plot_SBS288",
        "plot_SBS288_pdf",
        "plot_SBS96",
        "plot_SBS96_pdf"
      ]
    },
    {
      "page": "catalog_row_order",
      "title": "Return catalog row orders for all supported catalog types",
      "topics": [
        "catalog_row_order"
      ]
    },
    {
      "page": "heatmap_plots",
      "title": "plot_DBS136, plot_DBS136_pdf, plot_SBS1536, plot_SBS1536_pdf",
      "topics": [
        "heatmap_plots",
        "plot_DBS136",
        "plot_DBS136_pdf",
        "plot_SBS1536",
        "plot_SBS1536_pdf"
      ]
    },
    {
      "page": "id89_figlabels",
      "title": "Derive ID89 figure-axis labels from canonical IndelType strings",
      "topics": [
        "id89_figlabels"
      ]
    },
    {
      "page": "plot_guess",
      "title": "plot_guess, plot_guess_pdf",
      "topics": [
        "plot_guess",
        "plot_guess_pdf"
      ]
    }
  ],
  "_readme": "https://github.com/steverozen/msigplot/raw/HEAD/README.md",
  "_rundeps": [
    "Cairo",
    "cli",
    "cpp11",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "ggrepel",
    "glue",
    "gridExtra",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "magrittr",
    "patchwork",
    "pillar",
    "pkgconfig",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "mSigPlot.Rmd",
      "filename": "mSigPlot.html",
      "title": "Plotting mutational signatures with mSigPlot",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "SBS96 -- single base substitutions in trinucleotide context",
        "Optional styling: horizontal gridlines and an external title",
        "ID83 -- COSMIC indel classification",
        "ID89 -- 89-channel indel classification",
        "ID476 -- 476-channel indel classification",
        "ID476 right panel",
        "DBS78 -- doublet base substitutions",
        "SBS192 -- SBS with transcription strand",
        "DBS144 -- DBS with transcription strand",
        "DBS136 -- DBS heatmap",
        "SBS1536 -- SBS pentanucleotide context",
        "SBS288 -- SBS with three-strand context",
        "ID166 -- indel genic/intergenic",
        "SBS12 -- strand bias summary",
        "Auto-dispatch with plot_guess()",
        "Multi-sample PDF export"
      ],
      "created": "2026-02-25 01:45:57",
      "modified": "2026-04-20 02:22:25",
      "commits": 5
    }
  ],
  "_score": 5.459392487759231,
  "_indexed": true,
  "_nocasepkg": "msigplot",
  "_universes": [
    "steverozen"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.41",
      "date": "2026-05-15T22:01:15.000Z",
      "distro": "noble",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "c7de74661a4c69b5df272499c53d0a419faab345b3d1665cec8df802e0354e9c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.41",
      "date": "2026-05-15T22:00:46.000Z",
      "distro": "noble",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "4a50a734d91ff96dd459b8f59a5a332776b35db289791507219245d8c52e9770",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.41",
      "date": "2026-05-15T21:59:38.000Z",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "2126dd75d165e2c075a5629c07714e34976cf61d750f0fe7333a983caf26af20",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.41",
      "date": "2026-05-15T22:00:05.000Z",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "1bb46229ca5e5191d45732b16a97dedff30e012ed1b8100940d0af92e0fe683e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.41",
      "date": "2026-05-15T21:59:45.000Z",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "2bd221bd01e9390de3cece92017f642d479a65e924ac585a86b8231c580fe47e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.41",
      "date": "2026-05-15T21:59:38.000Z",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "1b1d393a9951c568042f4054357b80deba645ed16007aefbac1b6ef85811b032",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.41",
      "date": "2026-05-15T21:59:35.000Z",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "51d04eb0690e8f20a1d89ba874fa705b3e8f49c0a2259048d699ba01720eea61",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.41",
      "date": "2026-06-02T19:06:09.000Z",
      "commit": "f630c27b343b720642b0c9410e0457cb851669b1",
      "fileid": "c3c4947610ff2f9187fda72fee1eb1adb28e7a75b830bfd615989766fcc631cd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/steverozen/actions/runs/25943277178"
    }
  ]
}