Changes in version 0.1.3 (2026-09-27)                  

  - Changes requested in the CRAN review of 0.1.2:
      - License field is now GPL-3 and the redundant LICENSE file has
        been removed.
      - Acronyms (VCF, SBS, DBS, ID, PDF) are spelled out in DESCRIPTION
        and software names are single-quoted.
      - Added \value sections to the documentation of
        check_and_remove_discarded_variants(), is_catalog(), and
        subset_catalog(), and to all internal helper documentation.
      - quick_check_vcf() no longer uses print() to format the
        multiple-ALT warning.

                        Changes in version 0.1.2                        

  - Initial CRAN submission.
  - Provides a four-step pipeline for building mutational-spectrum
    catalogs from VCF files: read_vcf(), split_vcf(),
    annotate_sbs_or_dbs_vcf() / annotate_id_vcf(), and
    vcf_to_sbs_catalog() / vcf_to_dbs_catalog() / vcf_to_id_catalog().
  - Supports SBS, DBS, and indel (ID) catalogs for GRCh37, GRCh38, and
    GRCm38 reference genomes or any BSgenome genome. Adds
    transcript-strand annotation where transcript-ranges info is
    available.
  - Ships example Strelka and Mutect VCFs in inst/extdata/ and a
    vignette demonstrating the full pipeline.