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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "mSigSpectra" in publications use:'
type: software
license: GPL-3.0-only
title: 'mSigSpectra: Build Mutational-Spectrum Catalogs from Variant Call Format Files'
version: 0.1.3
doi: 10.32614/CRAN.package.mSigSpectra
abstract: Reads variant call format (VCF) files in a caller-agnostic way, annotates
  variants with flanking sequence context and transcriptional strand, and builds mutational-spectrum
  catalogs of single base substitutions (SBS), doublet base substitutions (DBS), and
  small insertions and deletions (indels, ID) at several resolutions (SBS96, SBS192,
  SBS1536, DBS78, DBS136, DBS144, ID83, ID89, ID166, ID476) and in both counts and
  density representations. Successor to the numerical core of the 'ICAMS' package
  with plotting, 'shiny', and portable document format (PDF) reporting removed; plotting
  is provided separately by 'mSigPlot'. Used in the preparation of Rozen et al. (2026)
  <https://doi.org/10.5281/zenodo.18451842>.
authors:
- family-names: Rozen
  given-names: Steve
  email: steverozen@pm.me
- family-names: Jiang
  given-names: Nanhai
- family-names: Boot
  given-names: Arnoud
- family-names: Liu
  given-names: Mo
- family-names: Wu
  given-names: Yang
- family-names: Huang
  given-names: Mi Ni
- family-names: Chang
  given-names: Jia Geng
repository: https://steverozen.r-universe.dev
repository-code: https://github.com/steverozen/mSigSpectra
commit: 1848df872cd6455a554ca737a608bc11f233d8a7
url: https://steverozen.github.io/mSigSpectra/
date-released: '2026-09-16'
contact:
- family-names: Rozen
  given-names: Steve
  email: steverozen@pm.me