Introduction | SBS96 -- single base substitutions in trinucleotide context | Optional styling: horizontal gridlines and an external title | ID83 -- COSMIC indel classification | ID89 -- 89-channel indel classification | ID476 -- 476-channel indel classification | ID476 right panel | DBS78 -- doublet base substitutions | SBS192 -- SBS with transcription strand | DBS144 -- DBS with transcription strand | DBS136 -- DBS heatmap | SBS1536 -- SBS pentanucleotide context | SBS288 -- SBS with three-strand context | ID166 -- indel genic/intergenic | SBS12 -- strand bias summary | Auto-dispatch with plot_guess() | Multi-sample PDF export
Package: mSigPlot 2.0.41
mSigPlot: Plotting Mutational Signatures and Mutational Spectra
Plotting functions for mutational signatures and mutational spectra, including single base substitutions (SBS), doublet base substitutions (DBS), and small insertions and deletions (indels). Generates plots similar to those used previously in Alexandrov et al. (2020)<doi:10.1038/s41586-020-1943-3> and Rozen et al. (2026)<doi:10.5281/zenodo.18451842>.
Authors:
mSigPlot_2.0.41.tar.gz
mSigPlot_2.0.41.zip(r-4.7-any)mSigPlot_2.0.41.zip(r-4.6-any)mSigPlot_2.0.41.zip(r-4.5-any)
mSigPlot_2.0.41.tgz(r-4.6-any)mSigPlot_2.0.41.tgz(r-4.5-any)
mSigPlot_2.0.41.tar.gz(r-4.7-any)mSigPlot_2.0.41.tar.gz(r-4.6-any)
mSigPlot_2.0.41.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mSigPlot/json (API)
| # Install 'mSigPlot' in R: |
| install.packages('mSigPlot', repos = c('https://steverozen.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/steverozen/msigplot/issues
Pkgdown/docs site:https://steverozen.github.io
Last updated from:ed62ebdc50. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 197 | ||
| source / vignettes | OK | 196 | ||
| linux-release-x86_64 | OK | 240 | ||
| macos-release-arm64 | OK | 150 | ||
| macos-oldrel-arm64 | OK | 127 | ||
| windows-devel | OK | 133 | ||
| windows-release | OK | 140 | ||
| windows-oldrel | OK | 141 | ||
| wasm-release | OK | 141 |
Exports:catalog_row_orderid89_figlabelsplot_DBS136plot_DBS136_pdfplot_DBS144plot_DBS144_pdfplot_DBS78plot_DBS78_pdfplot_guessplot_guess_pdfplot_ID166plot_ID166_pdfplot_ID476plot_ID476_pdfplot_ID476_rightplot_ID476_right_pdfplot_ID83plot_ID83_pdfplot_ID89plot_ID89_pdfplot_SBS12plot_SBS12_pdfplot_SBS1536plot_SBS1536_pdfplot_SBS192plot_SBS192_pdfplot_SBS288plot_SBS288_pdfplot_SBS96plot_SBS96_pdf
Dependencies:Cairoclicpp11dplyrfarvergenericsggplot2ggrepelgluegridExtragtableisobandlabelinglifecyclemagrittrpatchworkpillarpkgconfigR6RColorBrewerRcpprlangS7scalestibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| plot_DBS144, plot_DBS144_pdf, plot_DBS78, plot_DBS78_pdf, plot_ID166, plot_ID166_pdf, plot_ID476, plot_ID476_pdf, plot_ID476_right, plot_ID476_right_pdf, plot_ID83, plot_ID83_pdf, plot_ID89, plot_ID89_pdf, plot_SBS12, plot_SBS12_pdf, plot_SBS192, plot_SBS192_pdf, plot_SBS288, plot_SBS96, plot_SBS96_pdf | bar_plots plot_DBS144 plot_DBS144_pdf plot_DBS78 plot_DBS78_pdf plot_ID166 plot_ID166_pdf plot_ID476 plot_ID476_pdf plot_ID476_right plot_ID476_right_pdf plot_ID83 plot_ID83_pdf plot_ID89 plot_ID89_pdf plot_SBS12 plot_SBS12_pdf plot_SBS192 plot_SBS192_pdf plot_SBS288 plot_SBS288_pdf plot_SBS96 plot_SBS96_pdf |
| Return catalog row orders for all supported catalog types | catalog_row_order |
| plot_DBS136, plot_DBS136_pdf, plot_SBS1536, plot_SBS1536_pdf | heatmap_plots plot_DBS136 plot_DBS136_pdf plot_SBS1536 plot_SBS1536_pdf |
| Derive ID89 figure-axis labels from canonical IndelType strings | id89_figlabels |
| plot_guess, plot_guess_pdf | plot_guess plot_guess_pdf |
